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Apartments
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Check prices for these dates

Next weekend
13 Nov - 15 Nov
In two weeks
20 Nov - 22 Nov
In one month
4 Dec - 6 Dec
In two months
1 Jan - 3 Jan

Our top choices for Marathon houseboats

A waterfront property with floating houses connected by a wooden dock.

1. Yacht Haven Marina

Yacht Haven Marina
3.5 star property
Marathon
9.6 out of 10, Exceptional, (380 reviews)
"Loved staying in the aqua lodges, such a relaxing place."
United States
Lauren
The price is 2.458.427 ₫
6.388.513 ₫ total
includes taxes & fees
8 Nov - 9 Nov
Yacht Haven Marina
A waterfront property with floating homes connected by a dock.

2. Aqua Lodge Rentals At Coconut Cay

Aqua Lodge Rentals At Coconut Cay
3.5 star property
Marathon
9.6 out of 10, Exceptional, (239 reviews)
"Never stayed in a houseboat before. It was a novel experience!"
United States
Susan
The price is 2.487.210 ₫
6.695.502 ₫ total
includes taxes & fees
15 Nov - 16 Nov
Aqua Lodge Rentals At Coconut Cay
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Learn more about Marathon

This laid-back Keys community offers excellent snorkelling at Sombrero Beach and up-close encounters with sea turtles at the Turtle Hospital. Rent kayaks to explore the mangrove trails or head to nearby Bahia Honda State Park for some of Florida's most pristine beaches.

See all hotels in Marathon
A tall red metal structure with a 'Welcome to Marathon' sign.

Frequently Asked Questions

Why book your houseboat in Marathon with Expedia?

Expedia makes it a breeze to find houseboats in Marathon — from cute and cosy options to floating palaces fit for a queen (or king!). If you have a certain budget, select how much you're willing to spend and your preferred star rating. We'll help you find the right stay whatever your escape looks like.

How can I find cheap houseboats in Marathon?

If you're on the hunt for terrific deals on houseboats in Marathon, you'll want to implement several filters into your search. You can sort your results by price so that the cheapest options appear first. Then, change your filters to suit your budget. Expedia can help you find your dream floating escape whatever your plans or bank balance.

What is there to do in Marathon near my houseboat?

Marathon has enough activities and experiences to keep you entertained for weeks, beginning with Dolphin Research Centre. Florida Keys Aquarium Encounters, Sombrero Beach and Seven Mile Bridge are other wonderful attractions. If you're in town a while, Coco Plum Beach and Curry Hammock State Park will cap off your itinerary nicely.