A sunny beach with people sunbathing and swimming, palm trees, and buildings in the background.

Search Hotels Near Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Star rating

Guest rating

Selecting then applying a filter from this group will update the results on a new page

Our top choices for Mission Bay hotels

1. The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,840 reviews)
"I loved the location and the daily room service."
United States
Daniel
The price is 7.390.491 ₫
8.494.923 ₫ total
includes taxes & fees
5 Aug - 6 Aug
The Wayfarer San Diego

2. Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (429 reviews)
"Great place and cute restaurants in walking distance."
United States
Kimberly
The price is 6.386.378 ₫
7.200.641 ₫ total
includes taxes & fees
5 Aug - 6 Aug
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

3. ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (225 reviews)
"amazing vibe at this hostel."
Canada
Julien
The price is 3.979.397 ₫
4.486.770 ₫ total
includes taxes & fees
3 Sept - 4 Sept
ITH Mission Beach Backpacker Hostel

4. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,179 reviews)
"Nice and safe place to stay"
United States
Dominador
The price is 4.075.354 ₫
4.684.415 ₫ total
includes taxes & fees
2 Sept - 3 Sept
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

5. The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,000 reviews)
"Location"
United States
John
The price is 5.188.464 ₫
5.963.933 ₫ total
includes taxes & fees
24 Aug - 25 Aug
The Beach Cottages

6. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,423 reviews)
"Great stay"
United States
Loretta
The price is 5.492.938 ₫
7.069.333 ₫ total
includes taxes & fees
1 Sept - 2 Sept
The Dana on Mission Bay

7. Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (932 reviews)
"Great staff, hotel seemed new or at least renovated and was really nice"
United States
Francisco
The price is 3.287.000 ₫
3.778.241 ₫ total
includes taxes & fees
30 Aug - 31 Aug
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

8. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,011 reviews)
"Clean room, great staff and good breakfast"
United States
Leslie
The price is 4.286.248 ₫
4.926.827 ₫ total
includes taxes & fees
1 Sept - 2 Sept
Holiday Inn Express San Diego - SeaWorld Area by IHG

9. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,777 reviews)
"great location and great dining options"
United States
Beatrice A
The price is 7.465.402 ₫
9.971.916 ₫ total
includes taxes & fees
30 Aug - 31 Aug
Paradise Point Resort & Spa

10. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,316 reviews)
"Great resort"
United States
Gary
The price is 5.653.258 ₫
7.953.985 ₫ total
includes taxes & fees
30 Aug - 31 Aug
Bahia Resort Hotel

11. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,965 reviews)
"Excellent Customer Service, room was clean and located really close to the main stores. Definitely the breakfast was a plus. Will be staying here again"
United States
Othoniel
The price is 3.082.879 ₫
3.543.615 ₫ total
includes taxes & fees
1 Sept - 2 Sept
Comfort Inn Sea World Area

12. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,547 reviews)
"Great location, very clean and lots to do around the area!"
United States
Terri
The price is 6.284.744 ₫
8.614.569 ₫ total
includes taxes & fees
30 Aug - 31 Aug
San Diego Mission Bay Resort

13. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,631 reviews)
"We absolutely loved this hotel and will definitely revisit!"
United States
Casey
The price is 5.495.864 ₫
7.708.672 ₫ total
includes taxes & fees
1 Sept - 2 Sept
Hyatt Regency Mission Bay Spa and Marina

14. Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very good, (498 reviews)
"The staff were very helpful and wonderful. My daughter and I enjoyed our stay. The breakfast was very nicely put together as well! Close walk to the water and an easy drive to Sea World."
United States
Cassie
The price is 3.100.824 ₫
3.564.243 ₫ total
includes taxes & fees
16 Aug - 17 Aug
Best Western San Diego Pacific Beach/Mission Bay

15. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,294 reviews)
"Excellent stay, excellent experience"
United States
Dennis
The price is 2.663.181 ₫
3.061.193 ₫ total
includes taxes & fees
16 Aug - 17 Aug
GreenTree Inn San Diego Mission Bay

16. Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,359 reviews)
"Staff are amazing, best location and good pool."
Canada
Erica
The price is 5.097.963 ₫
5.757.894 ₫ total
includes taxes & fees
2 Sept - 3 Sept
Surfer Beach Hotel

17. ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (264 reviews)
"Great stay! Front desk guy was a little eccentric but very down to earth. Excellent area, with pacific beach a few steps away or take a bike or walk to mission beach. Amazing stay!"
United States
angelea
The price is 3.443.993 ₫
3.883.165 ₫ total
includes taxes & fees
18 Aug - 19 Aug
ITH Beach Bungalow Surf Hostel

18. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,161 reviews)
"It was a good stay for the price!"
United States
marissa
The price is 3.289.630 ₫
3.781.265 ₫ total
includes taxes & fees
30 Aug - 31 Aug
Wyndham Garden San Diego Near SeaWorld

19. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.2 out of 10, Good, (1,787 reviews)
"Great stay!"
United States
Ivan
The price is 1.735.533 ₫
1.994.908 ₫ total
includes taxes & fees
3 Sept - 4 Sept
Heritage Inn San Diego

20. E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,154 reviews)
"It was a great stay."
United States
Losi
The price is 2.056.347 ₫
2.363.484 ₫ total
includes taxes & fees
5 Aug - 6 Aug
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Room, 1 King Bed, Ocean View (ADA Guestroom) | View from room
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,840 reviews
View
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
429 reviews
View
Beach nearby, 5 beach bars
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
225 reviews
View
Studio Suite, 1 King Bed, Courtyard View | View from room
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
9.2
Wonderful
1,179 reviews
View
On the beach
The Beach Cottages
2.5 star property
9.2
Wonderful
1,000 reviews
View

Top Mission Bay Hotel Reviews

Other attractions near Mission Bay

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Whaley House Museum, Maritime Museum of San Diego or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, San Diego Black Ensemble Theater and SOMA - San Diego.