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Our top choices for Mission Bay hotels

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (352 reviews)
"We stayed in the hot tub room the second night, 10/10! "
United States
Nick
The price is 4.794.486 ₫
5.405.783 ₫ total
includes taxes & fees
11 May - 12 May
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,334 reviews)
"It is a beautiful place to stay."
United States
Dorothy
The price is 4.717.724 ₫
6.028.671 ₫ total
includes taxes & fees
10 May - 11 May
The Dana on Mission Bay

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (210 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
The price is 3.131.093 ₫
3.530.308 ₫ total
includes taxes & fees
6 May - 7 May
ITH Mission Beach Backpacker Hostel

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,577 reviews)
"Great resort for relaxing and enjoying the beachfront access."
United States
narine
The price is 5.483.366 ₫
7.697.614 ₫ total
includes taxes & fees
10 May - 11 May
Paradise Point Resort & Spa

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,769 reviews)
"Great location cute little beach hotel "
United States
Timothy
The price is 5.465.180 ₫
6.281.951 ₫ total
includes taxes & fees
26 May - 27 May
The Wayfarer San Diego

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
9.0 out of 10, Wonderful, (1,007 reviews)
"Property was in excellent condition staff was super friendly and the breakfast was amazing "
United States
Nedeshda
The price is 3.689.840 ₫
4.241.286 ₫ total
includes taxes & fees
10 May - 11 May
Holiday Inn Express San Diego - SeaWorld Area by IHG

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (900 reviews)
"The hotel was super clean and close to a lot of good food places!"
United States
Buna
The price is 3.855.356 ₫
4.431.538 ₫ total
includes taxes & fees
12 May - 13 May
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (2,048 reviews)
"Nice place to stay with the kids."
United States
Paul
The price is 4.458.117 ₫
6.589.781 ₫ total
includes taxes & fees
18 May - 19 May
Bahia Resort Hotel

The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,004 reviews)
"Amazing place to stay by the beach we really love the cottages , the kitchen the grill outside our cottage we are definitely coming back"
United States
Monique Michelle
The price is 4.605.975 ₫
5.294.394 ₫ total
includes taxes & fees
6 May - 7 May
The Beach Cottages

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,437 reviews)
"Perfect place for a family trip "
United States
Krystal
The price is 5.771.964 ₫
8.028.301 ₫ total
includes taxes & fees
10 May - 11 May
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,627 reviews)
"Great hotel with great staff and amenities. Great location for a San Diego get away."
United States
Donald
The price is 4.717.724 ₫
6.817.243 ₫ total
includes taxes & fees
10 May - 11 May
Hyatt Regency Mission Bay Spa and Marina

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (883 reviews)
"Good breakfast, easy parking and clean room."
United States
Anina
The price is 3.689.840 ₫
4.241.287 ₫ total
includes taxes & fees
25 May - 26 May
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,635 reviews)
"Great breakfast easy parking "
United States
Philip
The price is 2.799.007 ₫
3.217.319 ₫ total
includes taxes & fees
11 May - 12 May
Comfort Inn Sea World Area

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
Bay Park, 2.5 km from Mission Bay
8.2 out of 10, Very good, (377 reviews)
"The stay was good and close to the zoo and beach also shopping"
United States
Carol
The price is 2.296.135 ₫
2.639.292 ₫ total
includes taxes & fees
10 May - 11 May
Best Western San Diego Pacific Beach/Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,067 reviews)
"Great hotel and in a great location "
United States
Danielle
The price is 2.540.455 ₫
2.920.126 ₫ total
includes taxes & fees
26 May - 27 May
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,574 reviews)
"Very clean, a nice little place to stay in San Diego close to Pacific Beach and Mission Bay."
United States
Sean
The price is 2.754.466 ₫
3.111.032 ₫ total
includes taxes & fees
10 May - 11 May
SureStay Hotel by Best Western San Diego Pacific Beach

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,271 reviews)
"The hotel was in great location and the staff was super nice! "
United States
Heidi
The price is 5.482.048 ₫
6.191.699 ₫ total
includes taxes & fees
5 May - 6 May
Surfer Beach Hotel

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (258 reviews)
"Great location. "
United States
Xihao
The price is 1.510.989 ₫
1.703.651 ₫ total
includes taxes & fees
12 May - 13 May
ITH Beach Bungalow Surf Hostel

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,240 reviews)
"Great place!"
United States
Gayle
The price is 5.578.247 ₫
7.816.398 ₫ total
includes taxes & fees
10 May - 11 May
Catamaran Resort and Spa

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,224 reviews)
"Great overall stay. Would stay again. "
United States
German
The price is 2.729.164 ₫
3.137.038 ₫ total
includes taxes & fees
11 May - 12 May
Wyndham Garden San Diego Near SeaWorld
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
9.4
Exceptional
352 reviews
View
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,334 reviews
View
Living area
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
210 reviews
View
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa
4.0 star property
8.8
Excellent
2,577 reviews
View
Outdoor pool, a heated pool
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,769 reviews
View

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.