A sunny beach with people sunbathing and swimming, palm trees, and buildings in the background.

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Check prices for these dates

This weekend
6 Nov - 8 Nov
Next weekend
13 Nov - 15 Nov

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Our top choices for Mission Bay hotels

A pool area with lounge chairs and a hot tub, overlooking the ocean.

1. The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,977 reviews)
"Great area to vacation!"
United States
Lisa
The price is 4.414.859 ₫
5.074.660 ₫ total
includes taxes & fees
4 Nov - 5 Nov
The Wayfarer San Diego
A coastal cityscape with buildings along the beach, waves in the foreground, and a clear sky.

2. ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (242 reviews)
"Loved our stay here, perfect location and friendly staff!"
United States
Aida
The price is 2.103.102 ₫
2.371.247 ₫ total
includes taxes & fees
29 Nov - 30 Nov
ITH Mission Beach Backpacker Hostel
A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.

3. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,471 reviews)
"Everything about this place was great."
United States
Evelin
The price is 3.702.722 ₫
4.256.093 ₫ total
includes taxes & fees
1 Dec - 2 Dec
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
A beach view with a palm tree, a covered area with people, and a building with a sloped roof.

4. The Beach Cottages

The Beach Cottages
2.5 star property
Pacific Beach, 3.2 km from Mission Bay
9.2 out of 10, Wonderful, (1,005 reviews)
"Our stay was fun and enjoyable. The staff was beyond amazing and personable. Definitely a favorite place to stay."
United States
Leila
The price is 3.196.997 ₫
3.674.626 ₫ total
includes taxes & fees
29 Nov - 30 Nov
The Beach Cottages
A pool area with a hot tub, lounge chairs, and umbrellas.

5. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.6 km from Mission Bay
9.0 out of 10, Wonderful, (4,487 reviews)
"Really good hotel !!!"
United States
Assy Prune Celia
The price is 4.356.144 ₫
5.747.972 ₫ total
includes taxes & fees
30 Nov - 1 Dec
The Dana on Mission Bay
A modern restaurant with high tables, booths, and a central island.

6. Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
8.8 out of 10, Excellent, (983 reviews)
"Great stay."
United States
daniel
The price is 2.585.848 ₫
2.972.303 ₫ total
includes taxes & fees
15 Nov - 16 Nov
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
A spacious kitchen with a central island, wooden ceiling, and modern lighting fixtures.

7. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,012 reviews)
"Great place to rest your head"
United States
Kenneth
The price is 3.144.672 ₫
3.614.643 ₫ total
includes taxes & fees
1 Dec - 2 Dec
Holiday Inn Express San Diego - SeaWorld Area by IHG
An outdoor dining area with tables and chairs, overlooking a beach and ocean.

8. Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.8 out of 10, Excellent, (2,506 reviews)
"Love the location, nice & clean room, helpful staff, beautiful hotel!"
United States
Michael Lynn
The price is 3.590.597 ₫
5.558.768 ₫ total
includes taxes & fees
5 Nov - 6 Nov
Bahia Resort Hotel
An aerial view of a resort with a central swimming pool, palm trees, and a view of the ocean and beach.

9. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.3 km from Mission Bay
8.8 out of 10, Excellent, (2,973 reviews)
"Loved staying at Paradise Point!"
United States
victor
The price is 4.853.621 ₫
6.943.059 ₫ total
includes taxes & fees
29 Nov - 30 Nov
Paradise Point Resort & Spa
A reception desk with a wooden panel wall, a crescent-shaped logo, and a digital payment terminal.

10. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
3.1 km from Mission Bay
8.6 out of 10, Excellent, (4,281 reviews)
"Excellent stay"
United States
Dharmeshkumar
The price is 2.629.152 ₫
3.022.079 ₫ total
includes taxes & fees
1 Dec - 2 Dec
Comfort Inn San Diego - SeaWorld Area
A poolside view with a lounge chair, a towel, a tray with a drink and a coconut, and a pool with palm trees in the background.

11. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.6 out of 10, Excellent, (1,667 reviews)
"Amazing rooms and service!!"
United States
Aaroosh
The price is 4.871.664 ₫
6.962.871 ₫ total
includes taxes & fees
29 Nov - 30 Nov
San Diego Mission Bay Resort
A hotel room with two beds, a balcony with a view, a dining area, and a living room with a sofa and a table.

12. Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.8 km from Mission Bay
8.6 out of 10, Excellent, (1,397 reviews)
"We had a wonderful stay. Perfect location, amazing room and super friendly staff."
United States
Whitney
The price is 4.722.163 ₫
6.800.018 ₫ total
includes taxes & fees
2 Dec - 3 Dec
Catamaran Resort and Spa
A resort pool with a lazy river, palm trees, and a view of the ocean.

13. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1,629 reviews)
"Beautiful and the breakfast was delicious!"
United States
Megan
The price is 4.356.144 ₫
6.371.054 ₫ total
includes taxes & fees
1 Dec - 2 Dec
Hyatt Regency Mission Bay Spa and Marina
A modern reception area with a large arched window, a reception desk, a blue sofa, and a round wooden table.

14. Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very good, (605 reviews)
"I stay 4 night with my family Clean room nice staff close to sea world and beach save place for car price is good next time again i stay at the same hotel"
United States
Rishma
The price is 2.699.263 ₫
3.102.667 ₫ total
includes taxes & fees
15 Nov - 16 Nov
Best Western San Diego Pacific Beach/Mission Bay
A beach with palm trees, a sandy shore, and the ocean.

15. Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,384 reviews)
"On beach location, ocean view from room and walkable for food and drink."
United States
Audrey
The price is 3.299.328 ₫
3.726.426 ₫ total
includes taxes & fees
1 Dec - 2 Dec
Surfer Beach Hotel
A living room with a large window, a flat-screen TV, and a patterned rug.

16. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,442 reviews)
"Great stay!"
United States
Arman
The price is 2.902.120 ₫
3.335.842 ₫ total
includes taxes & fees
8 Nov - 9 Nov
GreenTree Inn San Diego Mission Bay
A wooden deck with surfboards and a beach view.

17. ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (276 reviews)
"Gorgeous view, and great breakfast burritos just around the corner!!"
United States
ivy
The price is 2.345.616 ₫
2.644.618 ₫ total
includes taxes & fees
17 Nov - 18 Nov
ITH Beach Bungalow Surf Hostel
A modern hotel lobby with a central seating area, a bar, and a large window providing natural light.

18. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,173 reviews)
"great stay"
United States
Sarah
The price is 2.472.434 ₫
2.841.939 ₫ total
includes taxes & fees
9 Nov - 10 Nov
Wyndham Garden San Diego Near SeaWorld
A pool area with a hot tub, lounge chairs, and umbrellas.

19. Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.0 out of 10, Good, (2,156 reviews)
"Room was clean and the man at check in was nice and polite"
United States
Michelle
The price is 1.751.221 ₫
2.012.941 ₫ total
includes taxes & fees
8 Nov - 9 Nov
Heritage Inn San Diego
A motel with a covered entrance, a sign indicating the name and price, and a paved driveway.

20. E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,218 reviews)
"I love this place"
United States
Elisha
The price is 1.411.236 ₫
1.622.341 ₫ total
includes taxes & fees
4 Nov - 5 Nov
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A pool area with lounge chairs and a hot tub, overlooking the ocean.
The Wayfarer San Diego
4.0 star property
9.4
Exceptional
1,977 reviews
View
A coastal cityscape with buildings along the beach, waves in the foreground, and a clear sky.
ITH Mission Beach Backpacker Hostel
2.0 star property
9.4
Exceptional
242 reviews
View
A modern hotel with a courtyard featuring outdoor seating, a chess table, and a well-maintained lawn.
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
9.2
Wonderful
1,471 reviews
View
A beach view with a palm tree, a covered area with people, and a building with a sloped roof.
The Beach Cottages
2.5 star property
9.2
Wonderful
1,005 reviews
View
A pool area with a hot tub, lounge chairs, and umbrellas.
The Dana on Mission Bay
3.5 star property
9.0
Wonderful
4,487 reviews
View

Top Mission Bay Hotel Reviews

Catamaran Resort and Spa

Catamaran Resort and Spa

10/10 Excellent
"Great Halloween weekend away. Staff was amazing will be coming back this summer room with view was beautiful"
Tess 2-night trip
Posted 4 hours ago
Catamaran Resort and Spa

Other attractions near Mission Bay

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 47 hotels and other accommodation options you'll find within a mile.
How many hotels will I find near Mission Bay?
Expedia has 47 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, SOMA - San Diego and San Diego Black Ensemble Theater.