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17 Dec - 18 Dec
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18 Dec - 19 Dec
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19 Dec - 21 Dec
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26 Dec - 28 Dec

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Our top choices for Mission Bay hotels

Living area
ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (201)
"great location and free parking available across the street. "
United States
Saquib
ITH Mission Beach Backpacker Hostel
Exterior
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (265)
"The hotel is in a great location, between the bay and ocean. We especially enjoyed the access to the bikes and beach chairs! "
United States
Laura
The price is 3.633.992 ₫
4.097.326 ₫ total
includes taxes & fees
18 Dec - 19 Dec
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
View from property
The Wayfarer San Diego

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1709)
"Nice rooms, great location!! Staff was very friendly "
United States
Kevin M
The price is 5.511.436 ₫
6.335.320 ₫ total
includes taxes & fees
21 Dec - 22 Dec
The Wayfarer San Diego
2 outdoor pools, a heated pool, pool loungers
The Dana on Mission Bay

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay, 1.7 km from Mission Bay
9.0 out of 10, Wonderful, (3929)
"Always love staying here. Staff was very courteous and the rooms very clean. "
United States
Eric
The price is 3.657.368 ₫
4.730.202 ₫ total
includes taxes & fees
5 Jan - 6 Jan 2026
The Dana on Mission Bay
Reception
Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (413)
"Clean rooms, friendly staff."
United States
KARLA
The price is 2.661.459 ₫
3.059.214 ₫ total
includes taxes & fees
5 Jan - 6 Jan 2026
Hampton Inn & Suites by Hilton San Diego SeaWorld
Free continental breakfast
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
2.5 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (801)
"good place to stay"
United States
Sisi
The price is 2.710.136 ₫
3.115.166 ₫ total
includes taxes & fees
30 Dec - 31 Dec
Fairfield Inn & Suites by Marriott San Diego Pacific Beach
5 outdoor pools, a heated pool, pool umbrellas, pool loungers
Paradise Point Resort & Spa

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay, 1.2 km from Mission Bay
8.6 out of 10, Excellent, (2355)
"Great stay, top tier service and excellent customer care "
Canada
Meriem
The price is 3.406.950 ₫
5.309.979 ₫ total
includes taxes & fees
18 Dec - 19 Dec
Paradise Point Resort & Spa
Suite, Multiple Beds | In-room safe, desk, laptop workspace, blackout curtains
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1006)
"Friendly staff at check in and clean room/hotel "
United States
Stefanie
The price is 3.529.426 ₫
4.056.899 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Holiday Inn Express San Diego - SeaWorld Area by IHG
Breakfast, lunch, dinner served; Mediterranean cuisine
Bahia Resort Hotel

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1816)
"Friendly staff and beautiful property "
United States
Cherron
The price is 3.335.834 ₫
5.300.987 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Bahia Resort Hotel
Outdoor pool, open 7:00 AM to 10:00 PM, pool cabanas (surcharge)
San Diego Mission Bay Resort

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.6 km from Mission Bay
8.4 out of 10, Very good, (1311)
"Room was super clean and updated, location up against the bay was perfect. We really enjoyed our stay and want to come back soon!"
United States
Haley
The price is 3.293.955 ₫
4.973.597 ₫ total
includes taxes & fees
18 Dec - 19 Dec
San Diego Mission Bay Resort
3 outdoor pools, pool cabanas (surcharge), pool umbrellas
Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay, 1.9 km from Mission Bay
8.4 out of 10, Very good, (1573)
"Loved our stay "
United States
Jeremy
The price is 3.366.124 ₫
5.262.787 ₫ total
includes taxes & fees
2 Jan - 3 Jan 2026
Hyatt Regency Mission Bay Spa and Marina
Lobby
Comfort Inn Sea World Area

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3143)
"good hotel "
United States
Lala
The price is 2.348.346 ₫
2.699.306 ₫ total
includes taxes & fees
5 Jan - 6 Jan 2026
Comfort Inn Sea World Area
Property amenity
Catamaran Resort and Spa

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1110)
"Great place to vacation. "
United States
Manuel
The price is 4.003.371 ₫
6.006.766 ₫ total
includes taxes & fees
5 Jan - 6 Jan 2026
Catamaran Resort and Spa
Premium bedding, pillow-top beds, in-room safe, desk
Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.2 out of 10, Very good, (192)
"Great stay, the staff was very friendly! "
United States
frances
The price is 1.793.290 ₫
2.061.297 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Best Western San Diego Pacific Beach/Mission Bay
Fishing
Surfer Beach Hotel

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1179)
"Right on the beach!! Old vintage hotel at a great price. Beds are super comfortable. "
United States
Stacy
The price is 3.529.426 ₫
3.986.408 ₫ total
includes taxes & fees
12 Jan - 13 Jan 2026
Surfer Beach Hotel
Lobby sitting area
GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1866)
"Courteous staff and clean room. "
United States
Rachel
The price is 2.218.797 ₫
2.550.396 ₫ total
includes taxes & fees
21 Dec - 22 Dec
GreenTree Inn San Diego Mission Bay
Free breakfast
SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1414)
"our stay was great and staff was supportive..."
United States
Ramesh
The price is 2.083.647 ₫
2.353.375 ₫ total
includes taxes & fees
23 Dec - 24 Dec
SureStay Hotel by Best Western San Diego Pacific Beach
Lobby
Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4116)
"Room was very clean and staff very pleasant "
Canada
Brian
The price is 2.226.962 ₫
2.559.782 ₫ total
includes taxes & fees
23 Dec - 24 Dec
Wyndham Garden San Diego Near SeaWorld
Outdoor pool
Heritage Inn San Diego

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1166)
"Clean room, great location "
United States
Benjamin
The price is 1.581.583 ₫
1.817.951 ₫ total
includes taxes & fees
23 Dec - 24 Dec
Heritage Inn San Diego
Exterior
E-Z 8 Motel Old Town

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.4 out of 10, (2072)
"Great staff, great room, great stay, great price!!!"
United States
Breanna
The price is 1.476.103 ₫
1.696.598 ₫ total
includes taxes & fees
28 Dec - 29 Dec
E-Z 8 Motel Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mission Bay Hotel Reviews

Hampton Inn & Suites by Hilton San Diego SeaWorld

Hampton Inn & Suites by Hilton San Diego SeaWorld

10/10 Excellent
"Spotless... traveling alone and after staying the night before in the 2nd worse place I have ever stayed - sounds dramatic but I really feared for my life! I could notfeare stayed"
Cynthia 1-night trip
Posted 2 days ago
Hampton Inn & Suites by Hilton San Diego SeaWorld

Hotels near other Mission Bay attractions

Mission Bay Park

4.4/5 (165 reviews)
Mission Bay Park is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
See properties

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 44 hotels and other accommodation options you'll find within a mile.
How many hotels will I find near Mission Bay?
Expedia has 44 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.