Search Spa Hotels in Nagasaki

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
6 Nov - 7 Nov
Tomorrow
7 Nov - 8 Nov
This weekend
6 Nov - 8 Nov
Next weekend
13 Nov - 15 Nov

Our top choices for Nagasaki hotels with a spa

A modern building with a glass facade, a pool area, and a view of a cityscape at night.

1. Candeo Hotels Nagasaki Shinchi Chinatown

Candeo Hotels Nagasaki Shinchi Chinatown
3.5 star property
Nagasaki Chinatown
9.0 out of 10, Wonderful, (889 reviews)
  • cleanliness
    Retreat to a sanctuary with rooftop Japanese spa at this spotless hotel, steps from Nagasaki's attractions for relaxation and exploration.
The price is 2.419.282 ₫
2.710.129 ₫ total
23 Nov - 24 Nov
Candeo Hotels Nagasaki Shinchi Chinatown
A traditional Japanese-style building with a tiled roof, surrounded by lush greenery and a stone pathway leading to the entrance.

2. Hilton Nagasaki

Hilton Nagasaki
4.0 star property
Nagasaki
9.6 out of 10, Exceptional, (563 reviews)
  • cleanliness
    Retreat to this modern hotel with a full-service spa and sauna, where rejuvenation awaits near Nagasaki's top attractions.
The price is 3.054.036 ₫
3.359.440 ₫ total
30 Nov - 1 Dec
Hilton Nagasaki
A modern indoor pool area with lounge chairs and sunbeds, a tiled wall, and a glass barrier.

3. STADIUM CITY HOTEL NAGASAKI

STADIUM CITY HOTEL NAGASAKI
4.0 star property
Nagasaki
9.4 out of 10, Exceptional, (317 reviews)
  • cleanliness
    Immerse in daily mineral hot springs and rejuvenating spa treatments at this Japanese wellness haven.
The price is 3.018.184 ₫
3.368.739 ₫ total
8 Nov - 9 Nov
STADIUM CITY HOTEL NAGASAKI
A modern hotel lobby with a reception desk, a seating area with a chair and a sofa, and a large window with curtains.

4. APA Hotel Nagasaki Ekimae

APA Hotel Nagasaki Ekimae
3.0 star property
Nagasaki
7.6 out of 10, Good, (1,000 reviews)
The price is 1.160.021 ₫
1.403.625 ₫ total
23 Nov - 24 Nov
APA Hotel Nagasaki Ekimae
A traditional Japanese building with a thatched roof, a koi pond, and a stone pathway.

5. i+Land nagasaki

i+Land nagasaki
3.5 star property
Nagasaki
9.2 out of 10, Wonderful, (562 reviews)
  • cleanliness
    Unwind in waterfront tranquility with hot springs and daily massages at this spa hotel by the sea.
The price is 2.723.584 ₫
3.344.273 ₫ total
11 Nov - 12 Nov
i+Land nagasaki
A modern massage chair with a control panel, a wooden shelf, and a small bowl.

6. ROYAL CHESTER NAGASAKI hotel & retreat

ROYAL CHESTER NAGASAKI hotel & retreat
3.5 star property
Nagasaki
8.4 out of 10, Very good, (78 reviews)
  • cleanliness
    Indulge in botanical spa treatments and deep soaking tubs near Peace Park, with a sauna, steam room, and hot tub for complete relaxation.
The price is 6.158.020 ₫
6.773.822 ₫ total
3 Dec - 4 Dec
ROYAL CHESTER NAGASAKI hotel & retreat
A hotel entrance with a modern design, featuring a glass door, a signboard, and a well-lit interior visible through the glass.

7. Super Hotel Nagasaki Isahaya Natural Hot Spring

Super Hotel Nagasaki Isahaya Natural Hot Spring
3.0 star property
Isahaya
10.0 out of 10, Exceptional, (1 review)
The price is 1.752.941 ₫
1.928.235 ₫ total
15 Nov - 16 Nov
Super Hotel Nagasaki Isahaya Natural Hot Spring
A room with a view of a lake and forest.

8. Unzen Azumaen

Unzen Azumaen
3.5 star property
Unzen
8.6 out of 10, Excellent, (115 reviews)
  • cleanliness
    Experience authentic relaxation at this ryokan with indoor mineral hot springs, massage treatments, and tranquil garden spaces.
The price is 7.177.640 ₫
8.733.681 ₫ total
7 Nov - 8 Nov
Unzen Azumaen
A traditional Japanese onsen with a wooden structure, a rock-lined pool, and a bamboo fence.

9. Wataya Besso

Wataya Besso
4.0 star property
Ureshino
8.6 out of 10, Excellent, (343 reviews)
  • cleanliness
    Embark on a riverside spa retreat in a traditional Japanese ryokan with natural hot springs and Thai massage treatments.
The price is 3.262.295 ₫
4.028.908 ₫ total
2 Dec - 3 Dec
Wataya Besso
A modern interior with a wooden floor, a seating area with cushions, and a glass partition.

10. Ryokan Yoshidaya

Ryokan Yoshidaya
3.5 star property
Ureshino
8.8 out of 10, Excellent, (110 reviews)
  • cleanliness
    Escape to a ryokan retreat with natural mineral hot springs, rejuvenating massages, and Japanese spring water tubs.
The price is 6.283.243 ₫
7.079.280 ₫ total
19 Nov - 20 Nov
Ryokan Yoshidaya
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Choose what matters most at spa hotels in Nagasaki

Pool
Breakfast included

Spa hotels with free breakfast in Nagasaki

A modern building with a glass-enclosed swimming pool and a view of the water.
Candeo Hotels Nagasaki Shinchi Chinatown

Candeo Hotels Nagasaki Shinchi Chinatown

Candeo Hotels Nagasaki Shinchi Chinatown
3.5 star property
Nagasaki Chinatown
9.0 out of 10, Wonderful, (889)
The price is 2.419.282 ₫
2.710.129 ₫ total
23 Nov - 24 Nov
Candeo Hotels Nagasaki Shinchi Chinatown
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Nagasaki Hotel Reviews

A traditional Japanese-style building with a tiled roof, surrounded by lush greenery and a stone pathway leading to the entrance.
Hilton Nagasaki

Hilton Nagasaki

Hilton Nagasaki
Nagasaki

10/10 Excellent

This was a great hotel. Everything about it was perfect for us. It's right across the road from the train station so wheeling heavy luggage to the hotel wasn't a problem. The tram stop is also close by for getting around the city. We bought a day ticket for the trams from the hotel reception. It was 600 yen per person. The staff were friendly and helpful. It looks as if it's very new but was in fact built in 2021. (So 5 years old at time of writing this) Our room was spacious and comfortable. I...
United Kingdom
Anne-Marie
Reviewed October 13, 2026
Hilton Nagasaki

Frequently Asked Questions

Looking to holiday at a spa hotel in Nagasaki?

Soothe the senses with some time in one of our wonderful spa hotels. Travellers recommend the popular shops in Nagasaki. Enjoy the museums and natural parks during your holiday. Spa hotels are a great way to break away from your routine and add a layer of luxury to your stay.

How many spa hotels are there in Nagasaki?

Among Expedia's 132 accommodation options in Nagasaki, there are 6 spa hotels.

What's there to see and do in Nagasaki?

Take in some sights and attractions while you're in Nagasaki by visiting Nagasaki City Office, Nagasaki Museum of History and Culture and Megane Bridge. If you have some spare time during your trip, you might want to check out Suwa Shrine and Hamanomachi Arcade.

What is a Nagasaki spa hotel?

Spa hotels in Nagasaki have full on-site spas offering services such as therapies and a choice of beauty treatments. Some also provide a selection of in-room treatments for the ultimate luxury. Spa hotels are ideal if you are looking for some R&R during your holiday.