The Best Hotels Closest to Shelter Island in San Diego - 2026 Updated Prices

A large abstract sculpture with a spiral base in a park.

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A beach with sand dunes and a person walking.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Carl

4.726.200 ₫

5.432.531 ₫ total

includes taxes & fees

15 Nov - 16 Nov

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

A modern lobby with a reception desk, seating area, and a large screen.

2. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Jaycie Nicole

4.806.684 ₫

5.525.042 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

3. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

3.891.374 ₫

4.472.940 ₫ total

includes taxes & fees

22 Nov - 23 Nov

A resort with two-story buildings, balconies, and a pool area.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

A canal lined with palm trees and a row of buildings with balconies.

4. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

4.109.514 ₫

5.240.535 ₫ total

includes taxes & fees

23 Nov - 24 Nov

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Sarah

3.251.427 ₫

3.737.352 ₫ total

includes taxes & fees

22 Nov - 23 Nov

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats docked, a balcony with chairs, and a view of the water.

A hotel room with a balcony, a sofa, a bed, a desk, and a TV.

6. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

4.217.550 ₫

4.847.863 ₫ total

includes taxes & fees

8 Nov - 9 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

A modern interior with a stone wall, leather sofa, and pendant lighting.

7. The Pearl Hotel

1.6 km from Shelter Island

Jane

4.052.386 ₫

4.577.217 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

A modern aquarium with a celestial-themed backdrop.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

4.395.554 ₫

5.052.469 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A square pizza on a wooden board with a fire pit in the background.

A hotel with a well-maintained lawn, palm trees, and a pool area.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

9. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

3.581.739 ₫

4.117.030 ₫ total

includes taxes & fees

22 Nov - 23 Nov

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

A gym with a treadmill, elliptical, and weight machines.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

10. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Elizabeth

2.945.874 ₫

3.380.520 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

11. Sea Harbor Hotel

1.4 km from Shelter Island

Michael

2.698.064 ₫

3.042.074 ₫ total

includes taxes & fees

10 Nov - 11 Nov

A marina with boats, a yacht, and a balcony with two chairs and a table.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

12. Kona Kai San Diego

0.3 km from Shelter Island

Michael

5.148.523 ₫

7.468.718 ₫ total

includes taxes & fees

1 Nov - 2 Nov

An outdoor patio area with seating arrangements, a fire feature, and ambient lighting.

A hotel room with a large TV mounted on a wooden panel, a wicker chair, a small table, and a view of a marina through a window.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Deborah

4.004.838 ₫

4.603.361 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

2.767.571 ₫

3.120.559 ₫ total

includes taxes & fees

24 Nov - 25 Nov

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A reception area with a wooden reception desk, a computer, and a chair.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

15. Hotel Point Loma

1.5 km from Shelter Island

Clint

2.401.591 ₫

2.867.198 ₫ total

includes taxes & fees

29 Oct - 30 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

16. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Sean

2.415.567 ₫

2.728.262 ₫ total

includes taxes & fees

17 Nov - 18 Nov

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

2.667.307 ₫

3.060.734 ₫ total

includes taxes & fees

26 Oct - 27 Oct

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

2.187.311 ₫

2.466.193 ₫ total

includes taxes & fees

24 Nov - 25 Nov

An outdoor patio area with seating arrangements, a pergola, and a green wall.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

19. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

1.416.567 ₫

1.599.941 ₫ total

includes taxes & fees

1 Nov - 2 Nov

A couple walking hand in hand on a sandy beach with the ocean in the background.

A cozy living room with a fireplace, a sofa, a dining table, and a chair.

A pathway flanked by lush tropical plants and a building with a large archway.

A hotel entrance with a covered patio, outdoor seating, and large flower planters.

20. 1906 Lodge

5.9 km from Shelter Island

Judith

6.952.574 ₫

7.661.389 ₫ total

includes taxes & fees

1 Nov - 2 Nov

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,700 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,242 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,740 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,148 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,621 reviews	View

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

10/10 Excellent

"The property was a great place to stay. The establishment is a little on the older side, so expect to hear a little bit of noise from the outside and the neighbors. Either way, it was a great place to stay just for a night."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"Second time staying here! Clean, comfortable and convenient location!"

Best Western Yacht Harbor Hotel

10/10 Excellent

"Convenient to airport and some good restaurants in Marina area! Easy to get to other attractions. Staff is great, and breakfast included."

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"Very pleasant stay."

Sheraton San Diego Resort

10/10 Excellent

"Wonderful. No complaints"

Ramada by Wyndham San Diego Airport

8/10 Good

"The room was clean but was run down. Hotel was old & need to be repaired. Paint chipping on walls & room was small."

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

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Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Courtyard by Marriott San Diego Airport/Liberty Station

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Humphreys Half Moon Inn

5. Best Western Plus Island Palms Hotel & Marina

6. Hilton San Diego Airport/Harbor Island

7. The Pearl Hotel

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. DoubleTree by Hilton San Diego Bayside

10. Best Western Yacht Harbor Hotel

11. Sea Harbor Hotel

12. Kona Kai San Diego

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

15. Hotel Point Loma

16. Comfort Inn San Diego Airport At The Harbor

17. Ramada by Wyndham San Diego Airport

18. Hotel Aqua Mar

19. Samesun Ocean Beach - Hostel

20. 1906 Lodge

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

Best Western Plus Island Palms Hotel & Marina

Best Western Yacht Harbor Hotel

Homewood Suites by Hilton San Diego Airport/Liberty Station

Sheraton San Diego Resort

Ramada by Wyndham San Diego Airport

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

Explore a world of travel with Expedia