Search Hotels Near Shelter Island, San Diego

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Next weekend
5 Jun - 7 Jun
In two weeks
12 Jun - 14 Jun

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Shelter Island hotels

Exterior

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,601 reviews)
"It was a very nice stay all around "
United States
Gregorio
The price is 4.499.523 ₫
5.171.976 ₫ total
includes taxes & fees
2 Jun - 3 Jun
Bay Club Hotel & Marina
Property grounds

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,986 reviews)
"Excellent stay!"
United States
Ashley
The price is 5.762.547 ₫
7.150.019 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Humphreys Half Moon Inn
Exterior

Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,517 reviews)
"Excellent location, breakfast was great"
United States
Travis
The price is 5.135.245 ₫
5.902.707 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Homewood Suites by Hilton San Diego Airport/Liberty Station
Exterior

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,598 reviews)
"Great location. Comfortable rooms and great views."
United States
Tesia
The price is 4.949.738 ₫
5.689.477 ₫ total
includes taxes & fees
15 Jun - 16 Jun
Best Western Plus Island Palms Hotel & Marina
Terrace/patio

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
9.0 out of 10, Wonderful, (28 reviews)
"Near airport."
United States
Justin
The price is 2.818.122 ₫
3.177.433 ₫ total
includes taxes & fees
9 Jun - 10 Jun
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
Courtyard view

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,303 reviews)
"Great location, good parking, great staff."
United States
Rosemary
The price is 5.128.667 ₫
5.895.147 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Courtyard by Marriott San Diego Airport/Liberty Station
Lobby

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,720 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is 4.640.298 ₫
5.333.790 ₫ total
includes taxes & fees
28 Jun - 29 Jun
Hampton Inn & Suites San Diego Airport Liberty Station
Lobby

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,006 reviews)
"Great location, delicious breakfast, room with kitchenette. Will stay again "
United States
Margaret
The price is 5.236.287 ₫
6.018.850 ₫ total
includes taxes & fees
1 Jun - 2 Jun
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Terrace/patio

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,205 reviews)
"I enjoyed to fresh sent of the hotel and the very friendly workers :)"
United States
christina
The price is 4.077.989 ₫
4.687.445 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Hilton San Diego Airport/Harbor Island
Front of property

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,002 reviews)
"Amazing place to stay! "
United States
Jodi
The price is 4.712.658 ₫
5.322.711 ₫ total
includes taxes & fees
1 Jun - 2 Jun
The Pearl Hotel
Gift shop

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,005 reviews)
"The room we had was comfortable and modern and the location is terrific!"
United States
Paul
The price is 3.239.656 ₫
3.652.712 ₫ total
includes taxes & fees
2 Jun - 3 Jun
Sea Harbor Hotel
Bar (on property)

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,038 reviews)
"Great restaurants"
United States
Gary
The price is 3.862.222 ₫
4.439.431 ₫ total
includes taxes & fees
7 Jun - 8 Jun
DoubleTree by Hilton San Diego Bayside
Standard Room, 2 Queen Beds, Non Smoking, Microwave | Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (1,907 reviews)
"The rooms were well kept and the breakfast was great!"
United States
Jessica
The price is 2.920.743 ₫
3.351.487 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Best Western Yacht Harbor Hotel
View from room

The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.4 out of 10, Very good, (747 reviews)
"Decent location but have to find street parking"
United States
Hema
The price is 4.399.534 ₫
5.057.044 ₫ total
includes taxes & fees
14 Jun - 15 Jun
The Monsaraz San Diego, Tapestry Collection by Hilton
Water view

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,005 reviews)
"We had a wonder visit from the moment we step into the resort. The Front desk staff help out us out with checking in, they even waived the parking fee. The rooms were clean and very comfortable. the views of courtyard and boats were great to see. We had a wonderful time and can't wait to book another visit."
United States
Michael
The price is 6.288.807 ₫
8.807.487 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Kona Kai San Diego
Exterior

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,517 reviews)
"I would stay there again"
United States
Steve
The price is 3.218.606 ₫
3.635.254 ₫ total
includes taxes & fees
7 Jun - 8 Jun
Comfort Inn San Diego Airport At The Harbor
Room, 1 King Bed, Non Smoking (Harbor View) | Beach/ocean view

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,001 reviews)
"Good place "
United States
Karen
The price is 3.243.077 ₫
3.721.431 ₫ total
includes taxes & fees
2 Jun - 3 Jun
Ramada by Wyndham San Diego Airport
Standard Room | Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (427 reviews)
"Nice stay for 2 nights. Close to coffee shops and restaurants."
United States
ERNESTO
The price is 2.110.036 ₫
2.379.066 ₫ total
includes taxes & fees
1 Jun - 2 Jun
Hotel Point Loma
Exterior detail

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"fairly priced hotel"
United States
Bruce
The price is 1.896.856 ₫
2.138.705 ₫ total
includes taxes & fees
1 Jun - 2 Jun
Hotel Aqua Mar
Lobby sitting area

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (508 reviews)
"Excellent stay, clean and nice people!"
United States
Christine
The price is 1.539.301 ₫
1.738.563 ₫ total
includes taxes & fees
11 Jun - 12 Jun
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,601 reviews
View
Property grounds
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
2,986 reviews
View
Exterior
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,517 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,598 reviews
View
Terrace/patio
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
9.0
Wonderful
28 reviews
View

Top Shelter Island Hotel Reviews

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport

8/10 Good
"Parking was handy Staff very kind, thoughtful and helpful"
carla 1-night trip
Posted 11 hours ago
Ramada by Wyndham San Diego Airport

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 37 hotels and other accommodation options you'll find within a mile.
How many hotels will I be able to find near Shelter Island?
Expedia has 37 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.