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Our top choices for Shinjuku hotels with a spa

Public bath
APA Hotel Shinjuku Gyoemmae

APA Hotel Shinjuku Gyoemmae

APA Hotel Shinjuku Gyoemmae
3.0 star property
Shinjuku
8.4 out of 10, Very good, (1954)
"Clean room & helpful staff."
United States
Melissa
The price is 2.360.859 ₫
2.856.724 ₫ total
6 Jan - 7 Jan 2026
APA Hotel Shinjuku Gyoemmae
Sauna, hot tub, body treatments, body scrubs, facials, 8 treatment rooms
Hyatt Regency Tokyo

Hyatt Regency Tokyo

Hyatt Regency Tokyo
4.5 star property
Shinjuku
9.0 out of 10, Wonderful, (1002)
"Great breakfast, clean rooms and great service! "
United States
KRISTIN M
The price is 5.686.370 ₫
7.193.258 ₫ total
6 Jan - 7 Jan 2026
Hyatt Regency Tokyo
Spring water bathtub, free toiletries, hair dryer, electronic bidet
Anshin Oyado Shinjuku - Caters to Men

Anshin Oyado Shinjuku - Caters to Men

Anshin Oyado Shinjuku - Caters to Men
2.0 star property
Shinjuku
9.0 out of 10, Wonderful, (1003)
"Capsule room was clean. Check-in staff was very friendly and helpful. Free amenities were impressive!"
Canada
Allen
The price is 3.532.454 ₫
3.885.699 ₫ total
16 Dec - 17 Dec
Anshin Oyado Shinjuku - Caters to Men
Public bath
Shinjuku Kuyakusho-mae Capsule Hotel

Shinjuku Kuyakusho-mae Capsule Hotel

Shinjuku Kuyakusho-mae Capsule Hotel
2.0 star property
Shinjuku
7.2 out of 10, Good, (1001)
"Rooms very clean and the staff friendly "
Australia
Stephen
Shinjuku Kuyakusho-mae Capsule Hotel
Aromatherapy, 2 treatment rooms
Hotel Balian Resort Shinjuku Honten

Hotel Balian Resort Shinjuku Honten

Hotel Balian Resort Shinjuku Honten
2.5 star property
Shinjuku
8.6 out of 10, Excellent, (32)
"Onsen options were great. Perfect location to go explore. "
United States
Scott
The price is 5.207.915 ₫
5.728.690 ₫ total
5 Jan - 6 Jan 2026
Hotel Balian Resort Shinjuku Honten
Presidential Penthouse (Sora) | Bathroom | Free toiletries, hair dryer, bathrobes, slippers
BELLUSTAR TOKYO, A Pan Pacific Hotel

BELLUSTAR TOKYO, A Pan Pacific Hotel

BELLUSTAR TOKYO, A Pan Pacific Hotel
5.0 star property
Shinjuku
9.8 out of 10, Exceptional, (122)
"Amazing hotel with great rooms!"
United States
Cody
The price is 10.997.710 ₫
13.912.144 ₫ total
26 Dec - 27 Dec
BELLUSTAR TOKYO, A Pan Pacific Hotel
Deluxe Room | 1 bedroom, minibar, WiFi, bed sheets
Boutique Sauna ARCH

Boutique Sauna ARCH

Boutique Sauna ARCH
2.0 star property
Shinjuku
8.6 out of 10, Excellent, (4)
"The staff were extremely helpful and let me check-in an hour earlier than the intended time. The room was beautiful from top to bottom; I love that the cold plunge was right next to the Sauna. The upstairs bathroom was amazing; everything was super clean and felt like home."
United States
Matthew
Boutique Sauna ARCH
Fitness facility
Park Hyatt Tokyo

Park Hyatt Tokyo

Park Hyatt Tokyo
5.0 star property
Shinjuku
9.6 out of 10, Exceptional, (901)
"Great hotel"
United States
Ignacio
The price is 18.954.565 ₫
23.977.525 ₫ total
6 Jan - 7 Jan 2026
Park Hyatt Tokyo
Public bath
APA Hotel & Resort Nishishinjuku Gochome Ekimae Tower

APA Hotel & Resort Nishishinjuku Gochome Ekimae Tower

APA Hotel & Resort Nishishinjuku Gochome Ekimae Tower
3.0 star property
Shibuya
8.8 out of 10, Excellent, (2135)
"An excellent hotel in a convenient location. Brilliant and attentive staff, great breakfast."
United Kingdom
Matthew
The price is 1.789.158 ₫
2.164.882 ₫ total
4 Jan - 5 Jan 2026
APA Hotel & Resort Nishishinjuku Gochome Ekimae Tower
Hot springs
Hotel Villa Fontaine Grand Haneda Airport

Hotel Villa Fontaine Grand Haneda Airport

Hotel Villa Fontaine Grand Haneda Airport
4.0 star property
Ota
9.2 out of 10, Wonderful, (8621)
"Great location, clean rooms and excellent breakfast."
United States
Tetsu
The price is 4.039.378 ₫
4.493.762 ₫ total
11 Jan - 12 Jan 2026
Hotel Villa Fontaine Grand Haneda Airport
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top Shinjuku Hotel Reviews

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Frequently asked questions

Looking to holiday at a spa hotel in Shinjuku?
Treat yourself to some pampering and book a hotel with a spa. Travellers love the array of shops and restaurants in Shinjuku. Enjoy the architecture and bars during your holiday. Spa hotels are the perfect way to break out of your daily routine and add a layer of luxury to your holiday.
How many spa hotels are there in Shinjuku?
Among Expedia's 674 accommodation options in Shinjuku, there are 6 spa hotels.
What's there to see and do in Shinjuku?
Experience Shinjuku with a stop at Shinjuku Subnade, Samurai Museum and Shinjuku Isetan. If you have extra time while you're in the area, you might want to see Isetan Department Store Shinjuku and Ninja Trick House In Tokyo.
What is a Shinjuku spa hotel?
Spa hotels in Shinjuku feature on-site spas which offer services including therapies and a range of beauty treatments. Some also provide a selection of in-room treatments for the ultimate luxury. Spa hotels are ideal if you are looking for some R&R during your holiday.