Search Hotels in Southeast San Rafael, San Rafael

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Our top choices for Southeast San Rafael hotels

Pool
Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East

Extended Stay America Suites San Rafael Francisco Blvd East
2.5 star property
Southeast San Rafael
6.8 out of 10, (1001)
"The room was clean! And the service was great!"
United States
Ana Lorena
The price is 2.907.494 ₫
3.262.099 ₫ total
includes taxes & fees
2 Jan - 3 Jan 2026
Extended Stay America Suites San Rafael Francisco Blvd East
Lobby sitting area
Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
17.8 km from Southeast San Rafael
9.0 out of 10, Wonderful, (7218)
"Great place to stay!"
United States
Isaiah
The price is 2.618.112 ₫
4.163.586 ₫ total
includes taxes & fees
5 Jan - 6 Jan 2026
Hotel Riu Plaza Fisherman's Wharf
Front of property – evening/night
Hilton San Francisco Financial District

Hilton San Francisco Financial District

Hilton San Francisco Financial District
4.0 star property
19.3 km from Southeast San Rafael
8.6 out of 10, Excellent, (2210)
"We loved our stay! "
United States
Christine
The price is 2.347.744 ₫
2.763.177 ₫ total
includes taxes & fees
8 Jan - 9 Jan 2026
Hilton San Francisco Financial District
Egyptian cotton sheets, premium bedding, down duvets, pillow-top beds
Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
17.7 km from Southeast San Rafael
9.0 out of 10, Wonderful, (3840)
"Excellent stay and great location! "
United States
CHRISTINE
The price is 3.194.987 ₫
4.965.995 ₫ total
includes taxes & fees
30 Jan - 31 Jan 2026
Hotel Caza Fisherman's Wharf
Terrace/patio
Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco
4.0 star property
19.5 km from Southeast San Rafael
8.8 out of 10, Excellent, (2844)
"Clean room, friendly staff and good location"
United States
Jose Eduardo
The price is 2.634.055 ₫
3.100.151 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Club Quarters Hotel in San Francisco
Terrace/patio
Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge

Hilton Garden Inn San Francisco/Oakland Bay Bridge
3.0 star property
21.6 km from Southeast San Rafael
8.8 out of 10, Excellent, (1151)
"Great staff and services provided."
United States
Charles
The price is 2.964.231 ₫
3.325.719 ₫ total
includes taxes & fees
7 Jan - 8 Jan 2026
Hilton Garden Inn San Francisco/Oakland Bay Bridge
Exterior
DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
18.6 km from Southeast San Rafael
8.2 out of 10, Very good, (4055)
"Clean rooms, great breakfast options & friendly staff"
United States
Beth
The price is 3.120.520 ₫
3.594.683 ₫ total
includes taxes & fees
18 Jan - 19 Jan 2026
DoubleTree by Hilton Hotel Berkeley Marina
Games room
Hotel Zephyr San Francisco

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
17.8 km from Southeast San Rafael
8.6 out of 10, Excellent, (2345)
"Great location"
United States
Deborah
The price is 3.287.578 ₫
4.796.803 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Hotel Zephyr San Francisco
Terrace/patio
Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge
3.0 star property
22.2 km from Southeast San Rafael
8.6 out of 10, Excellent, (1306)
"Convenient location, friendly staff"
United States
Diane
The price is 2.915.637 ₫
3.565.652 ₫ total
includes taxes & fees
9 Jan - 10 Jan 2026
Sonesta Emeryville - San Francisco Bay Bridge
Outdoor pool, open 9:00 AM to 7:00 PM, pool loungers
Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG
3.5 star property
19.3 km from Southeast San Rafael
9.0 out of 10, Wonderful, (5056)
"Nice stay. Hotel was clean, quiet and accessible. "
United States
Brandon
The price is 3.125.773 ₫
3.678.956 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Holiday Inn Golden Gateway by IHG
Interior
Hotel Shattuck Plaza

Hotel Shattuck Plaza

Hotel Shattuck Plaza
4.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1097)
"Wonderful, will stay here again."
United States
Jennifer
Hotel Shattuck Plaza
Lobby sitting area
Chancellor Hotel on Union Square

Chancellor Hotel on Union Square

Chancellor Hotel on Union Square
3.5 star property
19.8 km from Southeast San Rafael
9.4 out of 10, Exceptional, (3113)
"Clean room, helpful staff and great location to explore de city."
United States
Alan
The price is 1.989.462 ₫
2.350.752 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Chancellor Hotel on Union Square
Free daily buffet breakfast
Holiday Inn Express Hotel & Suites Berkeley by IHG

Holiday Inn Express Hotel & Suites Berkeley by IHG

Holiday Inn Express Hotel & Suites Berkeley by IHG
2.5 star property
20.3 km from Southeast San Rafael
9.0 out of 10, Wonderful, (1003)
"Amazing stay! Super helpful people in the front desk and breakfast was delicious"
United States
Marta Isabel Vanegas
The price is 3.493.511 ₫
4.024.351 ₫ total
includes taxes & fees
3 Jan - 4 Jan 2026
Holiday Inn Express Hotel & Suites Berkeley by IHG
Lobby
Marriott Vacation Club®, San Francisco

Marriott Vacation Club®, San Francisco

Marriott Vacation Club®, San Francisco
3.0 star property
17.8 km from Southeast San Rafael
9.2 out of 10, Wonderful, (1121)
"Great hotel"
United States
Michelle
The price is 3.546.045 ₫
4.173.518 ₫ total
includes taxes & fees
23 Jan - 24 Jan 2026
Marriott Vacation Club®, San Francisco
Exterior
Handlery Union Square Hotel

Handlery Union Square Hotel

Handlery Union Square Hotel
3.5 star property
20 km from Southeast San Rafael
8.8 out of 10, Excellent, (2804)
"Clean hotel, great location, kind staff! "
United States
Felix
The price is 27.560.650 ₫
32.437.507 ₫ total
includes taxes & fees
11 Jan - 12 Jan 2026
Handlery Union Square Hotel
Terrace/patio
Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area

Hyatt Place Emeryville/San Francisco Bay Area
3.0 star property
22.1 km from Southeast San Rafael
8.8 out of 10, Excellent, (1001)
"The entire stay was fabulous…room, breakfast, friendliness of staff, comfort and quiet!"
United States
Carol
The price is 3.782.448 ₫
4.243.717 ₫ total
includes taxes & fees
7 Jan - 8 Jan 2026
Hyatt Place Emeryville/San Francisco Bay Area
Corner Queen Room | Hypo-allergenic bedding, in-room safe, laptop workspace
YOTEL San Francisco

YOTEL San Francisco

YOTEL San Francisco
3.0 star property
20.6 km from Southeast San Rafael
8.2 out of 10, Very good, (1001)
"My room was clean, the staff is great and the amenities are great as well "
United States
Edwin
The price is 1.987.099 ₫
3.420.752 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
YOTEL San Francisco
Front of property – evening/night
Hotel Nikko San Francisco

Hotel Nikko San Francisco

Hotel Nikko San Francisco
4.5 star property
20.1 km from Southeast San Rafael
9.4 out of 10, Exceptional, (2658)
"Great service, great location, great hotel. "
United States
Laura
The price is 3.996.524 ₫
5.911.389 ₫ total
includes taxes & fees
23 Jan - 24 Jan 2026
Hotel Nikko San Francisco
Exterior
HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area

HYATT house Emeryville/San Francisco Bay Area
3.0 star property
21.9 km from Southeast San Rafael
9.2 out of 10, Wonderful, (1193)
"We had a relaxing stay at the Hyatt House. We enjoy the friendly staff and location."
United States
Darius
The price is 3.782.448 ₫
4.243.717 ₫ total
includes taxes & fees
7 Jan - 8 Jan 2026
HYATT house Emeryville/San Francisco Bay Area
Exterior detail
Hilton San Francisco Union Square

Hilton San Francisco Union Square

Hilton San Francisco Union Square
4.0 star property
20.1 km from Southeast San Rafael
8.4 out of 10, Very good, (1132)
"Liked the ambience and friendly hotel staff."
United States
Nagendra
The price is 4.157.015 ₫
4.892.598 ₫ total
includes taxes & fees
30 Jan - 31 Jan 2026
Hilton San Francisco Union Square
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Where to stay in Southeast San Rafael

Find the best Southeast San Rafael areas for the activities you enjoy most.
Mission San Rafael Arcangel which includes religious aspects, a church or cathedral and heritage architecture

Downtown San Rafael

While visiting Downtown San Rafael, you might make a stop by sights like Mission San Rafael Arcangel and San Rafael Pacifics Albert Park.

Terra Linda

Terra Linda might not have many top sights, but Marin County Civic Center and Marin County Civic Center Farmers' Market are two attractions nearby that you can check out.

Lucas Valley-Marinwood

If you're looking for some top things to see and do in Lucas Valley-Marinwood and surrounding area, you can visit Marin County Civic Center and Marin County Civic Center Farmers' Market.

Gerstle Park

While Gerstle Park isn't home to many top sights, Mission San Rafael Arcangel and San Rafael Pacifics Albert Park are some notable places to visit nearby.

Dominican

While Dominican isn't home to many top sights, Mission San Rafael Arcangel and Marin County Civic Center Farmers' Market are some notable places to visit nearby.

Top Southeast San Rafael Hotel Reviews

Mayflower Hotel

Mayflower Hotel

10/10 Excellent
"Staff was very helpful and our room was so clean. This hotel is a hidden gem tucked away."
Leigh 3-night trip
Posted 3 days ago
Mayflower Hotel

Frequently asked questions

What's it like in Southeast San Rafael?
You'll be sure to have fun exploring San Rafael's Southeast San Rafael neighbourhood. Looking for sights you might find in a travel guide about Southeast San Rafael? Consider a visit to San Francisco Bay while you're in the neighbourhood.
If I need to cancel my hotel reservation in Southeast San Rafael, will I receive a refund?
Yes! The majority of hotel bookings are refundable provided that you cancel before the hotel's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of booking. Put your dates in and click on "Search", then use the filter option "fully refundable" to review the best deals available in Southeast San Rafael.
What is there to do around this San Rafael neighbourhood?
Popular attractions in Southeast San Rafael include San Francisco Bay. While you're out sightseeing, Marin Country Mart and Larkspur Ferry Terminal are a couple of additional sights to visit in San Rafael.