Photo by Rebecca Friedland

Search Hotels in Mission Bay, San Francisco

Start date: Check-in selected.
To Date
End date: Check-out
  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

LUMA Hotel San Francisco
4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2371)
"Excellent location and room was spacious, clean and very comfortable bed. We will definitely stay here again! Great, friendly staff was an added bonus! "
United States
Linda
The price is 5.129.865 ₫
6.037.720 ₫ total
includes taxes & fees
21 Dec - 22 Dec
LUMA Hotel San Francisco

Hilton San Francisco Financial District

Hilton San Francisco Financial District
4.0 star property
Financial District, 3 km from Mission Bay
8.8 out of 10, Excellent, (2129)
"Great stay "
United States
Samantha
The price is 2.759.078 ₫
3.247.298 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Hilton San Francisco Financial District

Hotel Riu Plaza Fisherman's Wharf

Hotel Riu Plaza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7201)
"Good location and great hotel to stay, the bed was very comfortable and the breakfast was good with lots of options! "
Canada
Veronica
The price is 3.221.460 ₫
4.875.345 ₫ total
includes taxes & fees
17 Dec - 18 Dec
Hotel Riu Plaza Fisherman's Wharf

Club Quarters Hotel in San Francisco

Club Quarters Hotel in San Francisco
4.0 star property
Financial District, 2.8 km from Mission Bay
8.8 out of 10, Excellent, (2806)
"Clean and comfortable room, good staff, great location. "
United Kingdom
David
The price is 2.638.066 ₫
3.105.015 ₫ total
includes taxes & fees
16 Dec - 17 Dec
Club Quarters Hotel in San Francisco

Sonesta Emeryville - San Francisco Bay Bridge

Sonesta Emeryville - San Francisco Bay Bridge
3.0 star property
11.2 km from Mission Bay
8.6 out of 10, Excellent, (1285)
"Great overnight stay and across the street from the Bay Street shopping district."
United States
Sasha
The price is 2.569.668 ₫
3.177.940 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Sonesta Emeryville - San Francisco Bay Bridge

Chancellor Hotel on Union Square

Chancellor Hotel on Union Square
3.5 star property
2.5 km from Mission Bay
9.4 out of 10, Exceptional, (3068)
"Best location, friendly staff, had a wonderful time stayed! "
United States
Kalinda
The price is 1.992.491 ₫
2.354.331 ₫ total
includes taxes & fees
17 Dec - 18 Dec
Chancellor Hotel on Union Square

Holiday Inn Express and Suites Fisherman's Wharf by IHG

Holiday Inn Express and Suites Fisherman's Wharf by IHG
3.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (2222)
"spotless, breakfast, location, all excellent I will come back!"
United States
Oscar
The price is 3.130.533 ₫
4.473.691 ₫ total
includes taxes & fees
17 Dec - 18 Dec
Holiday Inn Express and Suites Fisherman's Wharf by IHG

King George Hotel

King George Hotel
3.0 star property
2.4 km from Mission Bay
8.6 out of 10, Excellent, (2106)
"Staff- clean room - great rate "
United States
Rick
The price is 2.271.873 ₫
3.068.449 ₫ total
includes taxes & fees
20 Dec - 21 Dec
King George Hotel

Hotel Caza Fisherman's Wharf

Hotel Caza Fisherman's Wharf
4.0 star property
Fisherman's Wharf, 4.6 km from Mission Bay
9.0 out of 10, Wonderful, (3833)
"We stay here a lot, great place and safe."
United States
Albert
The price is 3.196.300 ₫
4.969.376 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Hotel Caza Fisherman's Wharf

Hyatt Centric Fisherman's Wharf San Francisco

Hyatt Centric Fisherman's Wharf San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (1467)
"Super location easy walking to all the tourist locations Great food and hospitality services "
United States
Melissa
The price is 3.340.989 ₫
5.015.763 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Hyatt Centric Fisherman's Wharf San Francisco

Hilton San Francisco Airport Bayfront

Hilton San Francisco Airport Bayfront
4.0 star property
20.5 km from Mission Bay
8.6 out of 10, Excellent, (2738)
"Nice airport hotel…staff was great, breakfast was amazing "
United States
Lynne
The price is 2.459.178 ₫
2.795.962 ₫ total
includes taxes & fees
24 Dec - 25 Dec
Hilton San Francisco Airport Bayfront

DoubleTree by Hilton Hotel Berkeley Marina

DoubleTree by Hilton Hotel Berkeley Marina
4.0 star property
12.9 km from Mission Bay
8.2 out of 10, Very good, (3935)
"Great place to stay!"
United States
Rafael
The price is 2.951.645 ₫
3.400.147 ₫ total
includes taxes & fees
17 Dec - 18 Dec
DoubleTree by Hilton Hotel Berkeley Marina

FOUND Hotel, San Francisco

FOUND Hotel, San Francisco
2.0 star property
Union Square, 2.2 km from Mission Bay
8.4 out of 10, Very good, (681)
"Very welcoming, everything was super close by and the room was a perfect size for me."
United States
Anthony
FOUND Hotel, San Francisco

citizenM San Francisco Union Square

citizenM San Francisco Union Square
4.0 star property
Union Square, 2.2 km from Mission Bay
9.4 out of 10, Exceptional, (1425)
"Great location."
United States
Todd
The price is 2.814.849 ₫
3.312.936 ₫ total
includes taxes & fees
24 Dec - 25 Dec
citizenM San Francisco Union Square

Handlery Union Square Hotel

Handlery Union Square Hotel
3.5 star property
Union Square, 2.4 km from Mission Bay
8.8 out of 10, Excellent, (2804)
"Clean hotel, great location, kind staff! "
United States
Felix
The price is 29.575.645 ₫
34.809.055 ₫ total
includes taxes & fees
11 Jan - 12 Jan 2026
Handlery Union Square Hotel

Hotel Nikko San Francisco

Hotel Nikko San Francisco
4.5 star property
Union Square, 2.3 km from Mission Bay
9.4 out of 10, Exceptional, (2647)
"Very clean friendly staff and safe hotel "
United States
Lisa
The price is 4.002.610 ₫
5.920.390 ₫ total
includes taxes & fees
4 Jan - 5 Jan 2026
Hotel Nikko San Francisco

Orchard Garden Hotel

Orchard Garden Hotel
4.0 star property
Chinatown, 2.6 km from Mission Bay
9.6 out of 10, Exceptional, (1004)
"Great location "
Canada
Jorge
The price is 3.527.769 ₫
4.210.897 ₫ total
includes taxes & fees
20 Dec - 21 Dec
Orchard Garden Hotel

The Andrews Hotel

The Andrews Hotel
4.0 star property
2.7 km from Mission Bay
8.6 out of 10, Excellent, (1008)
"Easy check in and friendly staff."
United States
Barbara
The price is 2.213.734 ₫
2.605.455 ₫ total
includes taxes & fees
17 Dec - 18 Dec
The Andrews Hotel

Hotel Zephyr San Francisco

Hotel Zephyr San Francisco
4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (2335)
"Great decor and really great location"
United States
Jose
The price is 3.734.542 ₫
5.324.269 ₫ total
includes taxes & fees
18 Dec - 19 Dec
Hotel Zephyr San Francisco

Holiday Inn Golden Gateway by IHG

Holiday Inn Golden Gateway by IHG
3.5 star property
Nob Hill, 3.4 km from Mission Bay
9.0 out of 10, Wonderful, (4982)
"Rooms were great, staff was great, location was great. "
United States
Jonathan
The price is 3.130.533 ₫
3.684.482 ₫ total
includes taxes & fees
16 Dec - 17 Dec
Holiday Inn Golden Gateway by IHG
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Union Square

Known for its charming cafes and popular shops, there's plenty to explore in Union Square. Check out top attractions like Westin St Francis Hotel Glass Elevators and Union Square, and jump on the metro at Powell St & Geary Blvd Stop or Powell St & Post St Stop to see more of the city.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and San Francisco Bay are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

Fisherman's Wharf

Travellers love Fisherman's Wharf for its popular shops, and you can see more of San Francisco by jumping on the metro at Jones St and Beach St Stop or Jefferson St & Taylor St Stop. You might spend time checking out top sights like Pier 39 and San Francisco Bay.

South of Market

Gourmet restaurants great entertainment and top sights from Oracle Park to San Francisco Bay – discover South of Market, a destination also famous for its shopping.

Nob Hill

Gourmet restaurants Chinatown and top sights from SF Masonic Auditorium to Cable Car Museum – discover Nob Hill, a destination also famous for its shopping.

Top Mission Bay Hotel Reviews

Explore a world of travel with Expedia

Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Make sure that you visit Chase Center and Lefty O'Doul Bridge as part of your Mission Bay travel plans.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 18 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lefty O'Doul Bridge and Lucky Strike San Francisco are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.