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Search Hotels in Mission Bay, San Francisco

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Our top choices for Mission Bay hotels

LUMA Hotel San Francisco

4.0 star property
Mission Bay
9.6 out of 10, Exceptional, (2368)
"Amazing hotel"
United States
Leslie
The price is 5.140.590 ₫
6.050.343 ₫ total
includes taxes & fees
21 Dec - 22 Dec
LUMA Hotel San Francisco

Inn at Rockaway San Francisco Pacifica

2.5 star property
20.2 km from Mission Bay
8.2 out of 10, Very good, (1007)
"Beautiful location"
United States
Elena
Inn at Rockaway San Francisco Pacifica

The Evergreen

2.0 star property
20.3 km from Mission Bay
9.2 out of 10, Wonderful, (359)
"The staff at check in and throughout the stay was amazing and very helpful. The location is outstanding as right across from Corda Madera outdoor mall. "
Canada
Amy
The price is 2.728.570 ₫
3.055.999 ₫ total
includes taxes & fees
11 Dec - 12 Dec
The Evergreen

Harbor View Inn

2.0 star property
30.5 km from Mission Bay
9.2 out of 10, Wonderful, (616)
"very clean, very friendly, close to fun areas"
United States
michael
The price is 3.114.670 ₫
3.901.286 ₫ total
includes taxes & fees
11 Dec - 12 Dec
Harbor View Inn

The Lodge at Tiburon

3.5 star property
12.9 km from Mission Bay
8.8 out of 10, Excellent, (1005)
"Friendly staff, great amenities, and clean and spacious room."
United States
Jessica
The price is 4.958.692 ₫
6.302.859 ₫ total
includes taxes & fees
21 Dec - 22 Dec
The Lodge at Tiburon

DoubleTree by Hilton Hotel Berkeley Marina

4.0 star property
12.9 km from Mission Bay
8.2 out of 10, Very good, (3914)
"Great place to stay!"
United States
Rafael
The price is 3.131.806 ₫
3.607.684 ₫ total
includes taxes & fees
16 Dec - 17 Dec
DoubleTree by Hilton Hotel Berkeley Marina

Marin Suites Hotel

3.0 star property
21.2 km from Mission Bay
8.4 out of 10, Very good, (1006)
"Great location and good value for the money "
United States
Vincent
The price is 2.837.960 ₫
3.184.049 ₫ total
includes taxes & fees
16 Dec - 17 Dec
Marin Suites Hotel

Embassy Suites by Hilton San Rafael Marin County

3.5 star property
29 km from Mission Bay
8.8 out of 10, Excellent, (1006)
"The breakfast menu was good and a great variety "
United States
Daniel
The price is 3.353.246 ₫
3.762.174 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Embassy Suites by Hilton San Rafael Marin County

Best Western Corte Madera Inn

2.5 star property
20.8 km from Mission Bay
9.0 out of 10, Wonderful, (1007)
"Excellent place to stay"
United States
Dorla
The price is 3.473.194 ₫
3.896.750 ₫ total
includes taxes & fees
18 Dec - 19 Dec
Best Western Corte Madera Inn

La Quinta Inn & Suites by Wyndham San Francisco Airport N

3.0 star property
13.5 km from Mission Bay
8.0 out of 10, Very good, (2007)
"Breakfast is great. Staff is great."
United States
Trina
The price is 2.949.095 ₫
3.456.582 ₫ total
includes taxes & fees
20 Dec - 21 Dec
La Quinta Inn & Suites by Wyndham San Francisco Airport N

Holiday Inn Express and Suites Fisherman's Wharf by IHG

3.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.2 out of 10, Wonderful, (2218)
"This was an ok hotel. Good location. "
Australia
Shannon
The price is 2.741.648 ₫
4.017.569 ₫ total
includes taxes & fees
17 Dec - 18 Dec
Holiday Inn Express and Suites Fisherman's Wharf by IHG

Hotel Shattuck Plaza

4.0 star property
15.4 km from Mission Bay
8.8 out of 10, Excellent, (1076)
"Wonderful, will stay here again."
United States
Jennifer
Hotel Shattuck Plaza

Hilton Garden Inn San Francisco Arpt North

3.0 star property
12.6 km from Mission Bay
8.4 out of 10, Very good, (1009)
"Staff, amenities, clean rooms "
United States
ROMEO JR
The price is 2.404.214 ₫
2.829.429 ₫ total
includes taxes & fees
21 Dec - 22 Dec
Hilton Garden Inn San Francisco Arpt North

The Marina Inn on San Francisco Bay

2.5 star property
19.6 km from Mission Bay
8.6 out of 10, Excellent, (2277)
"Great place to stay!"
United States
Dixon
The Marina Inn on San Francisco Bay

HYATT house Emeryville/San Francisco Bay Area

3.0 star property
11.5 km from Mission Bay
9.2 out of 10, Wonderful, (1175)
"We’ve stayed several times, and it’s always really enjoyable!"
United States
thomas
The price is 4.009.660 ₫
4.498.638 ₫ total
includes taxes & fees
12 Dec - 13 Dec
HYATT house Emeryville/San Francisco Bay Area

Holiday Inn Golden Gateway by IHG

3.5 star property
Nob Hill, 3.4 km from Mission Bay
9.0 out of 10, Wonderful, (4943)
"Rooms were great, staff was great, location was great. "
United States
Jonathan
The price is 3.137.078 ₫
3.692.184 ₫ total
includes taxes & fees
14 Dec - 15 Dec
Holiday Inn Golden Gateway by IHG

Embassy Suites by Hilton San Francisco Airport Oyster Point

3.5 star property
12.8 km from Mission Bay
8.6 out of 10, Excellent, (1231)
"Everything was just great the amenities the staff the cleanliness the breakfast I had a very relaxing and great time "
United States
Lily
The price is 2.783.933 ₫
3.286.675 ₫ total
includes taxes & fees
9 Jan - 10 Jan 2026
Embassy Suites by Hilton San Francisco Airport Oyster Point

Hyatt Centric Fisherman's Wharf San Francisco

4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
8.6 out of 10, Excellent, (1471)
"Clean and great location "
United States
Shawn
The price is 3.114.670 ₫
4.751.661 ₫ total
includes taxes & fees
14 Dec - 15 Dec
Hyatt Centric Fisherman's Wharf San Francisco

Hotel Riu Plaza Fisherman's Wharf

4.0 star property
Fisherman's Wharf, 4.5 km from Mission Bay
9.0 out of 10, Wonderful, (7189)
"Great staff, clean rooms, good breakfast buffet"
United States
Debra
The price is 3.401.145 ₫
5.089.091 ₫ total
includes taxes & fees
18 Dec - 19 Dec
Hotel Riu Plaza Fisherman's Wharf

Mayflower Hotel

2.0 star property
2.8 km from Mission Bay
8.8 out of 10, Excellent, (199)
"Great hotel, would stay again. "
United States
Bernadette
The price is 2.586.112 ₫
3.038.680 ₫ total
includes taxes & fees
12 Dec - 13 Dec
Mayflower Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Union Square

Known for its charming cafes and popular shops, there's plenty to explore in Union Square. Check out top attractions like Westin St Francis Hotel Glass Elevators and Union Square, and jump on the metro at Powell St & Geary Blvd Stop or Powell St & Post St Stop to see more of the city.

Downtown San Francisco

Known for its fascinating museums, popular shops and acclaimed art galleries, there's plenty to explore in Downtown San Francisco. Top attractions like Oracle Park and Chase Center are major draws. Catch the metro at Market St & 5th St Stop or Market St & Taylor St Stop to see more of the city.

Fisherman's Wharf

Travellers love Fisherman's Wharf for its popular shops, and you can see more of San Francisco by jumping on the metro at Jones St and Beach St Stop or Jefferson St & Taylor St Stop. You might spend time checking out top sights like Pier 39 and Hyde Street Pier.

South of Market

Gourmet restaurants great entertainment and top sights from Oracle Park to Chase Center – discover South of Market, a destination also famous for its shopping.

Nob Hill

Gourmet restaurants Chinatown and top sights from SF Masonic Auditorium to Cable Car Museum – discover Nob Hill, a destination also famous for its shopping.

Top Mission Bay Hotel Reviews

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Frequently asked questions

What is Mission Bay like?
Travellers will be sure to enjoy their time in San Francisco's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Chase Center while you're in the neighbourhood.
How many hotels will I be able to find in Mission Bay?
When you want to put your feet up after a day of exploring the sights in San Francisco, you can choose from 17 Expedia hotels and other accommodation options in Mission Bay.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes! The majority of hotel bookings are fully refundable provided that you cancel prior to the accommodation's cancellation deadline, which often is within 24-48 hours of your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and be given a refund within 24 hours of booking. Put your dates in and click on "Search", then you can filter by "fully refundable" to review the best deals available in Mission Bay.
What are the top things to see and do in Mission Bay?
Chase Center, Lucky Strike San Francisco and Lefty O'Doul Bridge are just a few attractions to check out in Mission Bay. While you're out sightseeing, Oracle Park and Pier 39 are a couple of additional sights to visit in San Francisco.
How can I get around Mission Bay and the greater San Francisco area?
For a quick way to explore the city, catch a ride on metro transit at UCSF/Chase Center Stop, Mission Rock Station or UCSF Mission Bay Stop. To venture out of town, take a train from San Francisco Station.