Search Hotels in Mission Bay, San Diego

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,441 reviews)
"Clean Rooms, staff very friendly, very relaxing place "
United States
AlmaDelia
The price is 5.345.427 ₫
7.529.397 ₫ total
includes taxes & fees
25 Mar - 26 Mar
Paradise Point Resort & Spa

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,354 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is 6.257.737 ₫
8.577.551 ₫ total
includes taxes & fees
8 Mar - 9 Mar
San Diego Mission Bay Resort

Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,607 reviews)
"Balcony view is awesome, clean room, staff at counter and restaurant service was stunning."
United States
francisco
The price is 4.424.927 ₫
6.471.653 ₫ total
includes taxes & fees
11 Mar - 12 Mar
Hyatt Regency Mission Bay Spa and Marina

The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,143 reviews)
"Great location and grounds!"
United States
Ethan
The price is 4.948.587 ₫
6.290.100 ₫ total
includes taxes & fees
8 Mar - 9 Mar
The Dana on Mission Bay

Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG
3.5 star property
4 km from Mission Bay
8.0 out of 10, Very good, (1,010 reviews)
"Great stay"
United States
Viviann
The price is 2.644.483 ₫
3.049.992 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Crowne Plaza San Diego - Mission Valley by IHG

The Sands of La Jolla

The Sands of La Jolla
2.5 star property
5.7 km from Mission Bay
9.0 out of 10, Wonderful, (762 reviews)
"Great location and nice area."
United States
Gary
The price is 3.377.607 ₫
3.808.317 ₫ total
includes taxes & fees
5 Mar - 6 Mar
The Sands of La Jolla

La Jolla Shores Hotel

La Jolla Shores Hotel
3.0 star property
9.3 km from Mission Bay
8.8 out of 10, Excellent, (1,371 reviews)
"Beachfront location was perfect and staff was great."
United States
Jack
The price is 7.988.433 ₫
10.692.016 ₫ total
includes taxes & fees
5 Mar - 6 Mar
La Jolla Shores Hotel

Wyndham San Diego Bayside

Wyndham San Diego Bayside
4.0 star property
8 km from Mission Bay
8.4 out of 10, Very good, (6,071 reviews)
"Great place to stay"
United States
David
The price is 3.981.918 ₫
5.527.586 ₫ total
includes taxes & fees
29 Mar - 30 Mar
Wyndham San Diego Bayside

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2.3 km from Mission Bay
8.6 out of 10, Excellent, (1,908 reviews)
"Amazing place "
United States
Richard
The price is 5.096.521 ₫
7.312.674 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Bahia Resort Hotel

Courtyard by Marriott Old Town

Courtyard by Marriott Old Town
3.0 star property
Old Town San Diego, 3.9 km from Mission Bay
8.8 out of 10, Excellent, (1,016 reviews)
"Great place!!!"
United States
Hannah
The price is 4.424.927 ₫
5.086.310 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Courtyard by Marriott Old Town

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,182 reviews)
"Good location friendly staff"
United States
Anya
The price is 2.330.287 ₫
2.678.548 ₫ total
includes taxes & fees
5 Mar - 6 Mar
Wyndham Garden San Diego Near SeaWorld

Ash&9th

Ash&9th
2.0 star property
8.8 km from Mission Bay
8.2 out of 10, Very good, (383 reviews)
"Great location… stuff was really friendly "
United States
Aurora
The price is 2.215.082 ₫
2.519.656 ₫ total
includes taxes & fees
9 Mar - 10 Mar
Ash&9th

Best Western Premier Hotel Del Mar

Best Western Premier Hotel Del Mar
3.5 star property
19.8 km from Mission Bay
9.4 out of 10, Exceptional, (1,003 reviews)
"Clean room, staff were helpful, great location, pool and hottub were nice, breakfast was good as well!"
United States
Rosemary
The price is 2.911.550 ₫
3.295.916 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Best Western Premier Hotel Del Mar

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (694 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is 4.069.067 ₫
4.677.188 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
2.9 km from Mission Bay
8.6 out of 10, Excellent, (3,436 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is 2.559.388 ₫
2.941.888 ₫ total
includes taxes & fees
10 Mar - 11 Mar
Comfort Inn Sea World Area

Hilton San Diego/Del Mar

Hilton San Diego/Del Mar
4.0 star property
22.6 km from Mission Bay
8.6 out of 10, Excellent, (1,018 reviews)
"The room was clean and the front desk was very nice. "
United States
amy
The price is 3.074.513 ₫
3.497.258 ₫ total
includes taxes & fees
15 Mar - 16 Mar
Hilton San Diego/Del Mar

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,062 reviews)
"great stay"
United States
Jose
The price is 3.560.888 ₫
4.093.063 ₫ total
includes taxes & fees
8 Mar - 9 Mar
Holiday Inn Express San Diego Airport - Old Town by IHG

Ocean Villa Inn

Ocean Villa Inn
2.5 star property
Ocean Beach, 3.5 km from Mission Bay
8.0 out of 10, Very good, (1,187 reviews)
"Beds are super comfy clean and renovated"
United States
Esmeralda
Ocean Villa Inn

Westgate Hotel

Westgate Hotel
4.5 star property
8.7 km from Mission Bay
9.2 out of 10, Wonderful, (1,008 reviews)
"Great stay"
United States
ESMERALDA
Westgate Hotel

Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,351 reviews)
"Great location, great price, nice hotel "
United States
Estela
The price is 4.042.655 ₫
4.646.830 ₫ total
includes taxes & fees
11 Mar - 12 Mar
Hilton Garden Inn San Diego Old Town/SeaWorld Area
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas for the activities you enjoy most.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

Pacific Beach

The stunning beaches and fantastic nightlife are just a few highlights of Pacific Beach. Make a stop by Mission Bay or Pacific Beach while you're exploring the area.

Mission Beach

If you're spending some time in Mission Beach, Mission Bay and Mission Beach are top sights worth seeing.

Gaslamp Quarter

Cosy bars interesting history and top sights from Gaslamp Museum at the Davis-Horton House to Lyceum Theatre – discover Gaslamp Quarter, a destination also famous for its shopping.

Ocean Beach

Ocean Beach is beloved for its stunning beaches. Take some time to explore sights in the area like Ocean Beach and Dog Beach.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun exploring San Diego's Mission Bay neighbourhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighbourhood.
How many hotels should I expect to find in the Mission Bay area?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 46 Mission Bay hotels and other accommodation options to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then you can use the "fully refundable" filter to view top deals in Mission Bay.
What is there to do around this San Diego neighbourhood?
Enjoy a stroll along the shore at Mission and Pacific Beaches, Ski Beach and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or Mission Bay Golf Course while you're in the neighbourhood. Mission Beach, North Cove Beach and Bahia Point Beach are just a few of the places to visit in and around Mission Bay. When you're sightseeing in San Diego, Bay City Brewing Co. and Sail Bay are also worth a stop.